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Mid LevelFull-timeAWSDockerCI/CDGit
Salary Range
$102,000 - $138,000 /year
This salary is estimated based on similar roles. The actual salary may vary.
About the Role
We are seeking a Bioinformatics Software Engineer to design, develop, and maintain scalable bioinformatics pipelines on cloud-based infrastructure. This role will support the SMaHT Data Analysis Center in managing multi-omic data and ensuring reproducible code standards.
Key Responsibilities
- →Design, implement, and maintain bioinformatics pipelines for high-throughput sequencing data
- →Build reproducible, well-tested, and automated workflows using workflow management systems like CWL
- →Architect and manage AWS-based compute infrastructure for pipeline execution
- →Containerize workflows using Docker or similar tools
- →Integrate CI/CD tooling to automate testing, deployment, and version control
- →Develop utility tools for metadata management and file conversion
- →Collaborate with research scientists, engineers, and IT teams
- →Document code, workflows, and infrastructure configurations clearly
Requirements
- ✓Deep understanding of next-generation sequencing (NGS) data analysis
- ✓Experience with workflow automation and cloud computing
- ✓Knowledge of cloud software engineering best practices
- ✓Familiarity with containerization technologies like Docker
- ✓Strong programming skills in relevant languages
- ✓Experience with CI/CD tooling
- ✓Ability to work in research and production environments where reproducibility, scalability, and performance are critical
